Aquatic Barriers & Fish Movement

Preserving and enhancing habitat connectivity – that is, enabling fish and aquatic species to move easily between habitats – is one of the keys to maintaining biodiversity in rivers and streams.

Regionally, Brook Trout are found in the Duffins Creek, Humber River and Rouge River watersheds, predominantly where these watersheds overlap with the Oak Ridges Moraine or Greenbelt lands. As a sensitive coldwater fish species, Brook Trout rely on cold, clean water with plenty of groundwater upwellings to support their spawning, feeding, and overall habitat needs. Climate change, invasive or stocked species, habitat fragmentation, and land use changes all pose threats to Brook Trout habitat. For example, most of their populations are disconnected by dams or barriers, contributing to their decline.

The Issue:
Barriers to Aquatic Species Movement

In linear networks, like rivers and creeks, fish and other aquatic organisms need to move freely to feed, reproduce, and survive winter conditions.

Allowing fish to move freely improves aquatic connectivity, supports healthy fish populations, enhances access to critical spawning and overwintering habitats, and strengthens overall ecosystem resilience.

Toronto and Region Conservation Authority (TRCA) is working to improve aquatic connectivity across our watersheds by addressing instream barriers, such as instream ponds or dams/weirs, that block access to important habitats and disrupt aquatic ecosystems.

Instream barriers cause several issues within river systems:

  • Habitat fragmentation
  • Impaired water quality and altered temperatures
  • Blocked fish migration between Lake Ontario and upstream headwaters

A notch in the centre of the Old Mill Dam on the Humber River is designed to aid salmon in their migration upstream
A “notch” in the centre of the Old Mill Dam on the Humber River is designed to aid salmon in their migration upstream.

In some cases, barriers can be intentionally maintained to support aquatic habitat management.

These strategic barriers can help prevent the upstream movement of aquatic invasive species, such as Sea Lamprey (Petromyzon marinus) or Round Goby (Neogobius melanostomus), adding a level of protection against the establishment of potential invaders.

TRCA team member installs traps to capture invasive Sea Lamprey
Since 2005, TRCA has worked in contract partnership with Fisheries and Oceans Canada (DFO) to collect invasive Sea Lamprey during their spawning season (mid-April to mid-June) to reduce their impact on fish communities within Lake Ontario. There are traps built into the first weirs of the Humber River and Duffins Creek, with the intent of capturing the adult Sea Lamprey as they migrate upstream to spawn.

Key Focus Areas in
Aquatic Barriers and Fish Movement Research

TRCA’s applied research focuses on improving aquatic habitat connectivity by identifying, removing, or modifying instream barriers that prevent fish and other aquatic organisms from moving freely through waterways.

Through targeted restoration projects, strategic barrier mitigation, and collaboration with municipal and community partners, TRCA is reconnecting fragmented waterways to support long‑term watershed health.

Key areas of our work include:

1. Priority Analyses for Barrier Removal or Mitigation

We inspect and map instream barriers to identify where aquatic connectivity is most limited. This approach helps us determine which barriers should be modified or removed.

This process ensures that restoration efforts focus on locations where connectivity improvements will have the greatest ecological benefit.

Priority setting is further guided by Fisheries Management and/or Watershed Plans, which help determine which barriers should be addressed first based on their impact on aquatic habitat, native species, and/or ecosystem health.

map showing priority barriers for removal in the Humber River watershed
Priority barriers for removal in the Humber River watershed.

By considering the ecological needs of aquatic species within each system, we can make informed decisions that support:

  • Freshwater mussel populations
  • Control of invasive species, such as Sea Lamprey, Rusty Crayfish, and Round Goby
  • Rare and sensitive species, such as Slimy Sculpin and Brook Trout
  • Both migratory and resident fish populations
  • Healthy native fish communities
  • Species at risk, such as Redside Dace
  • Natural thermal regimes (cold, cool, and warmwater systems)

2. Strategic Research

TRCA undertakes targeted applied research projects to better understand the seasonal habitat needs and movement patterns of fish to help guide conservation decision-making across our watersheds.

These studies provide critical insights into how fish use their environments and how aquatic connectivity influences their long-term survival.

Key examples include:

  • Redside Dace Overwinter Habitat and Movement Study
  • Evaluating the effectiveness of barriers as species partitions, both for the Rouge Fisheries Management Plan and for aquatic invasive species such as Sea Lamprey
  • Tagging study for Town of Richmond Hill (Don River) to examine fish passability
  • Testing of telemetry equipment used to track fish movement
Testing of Telemetry Equipment - BioMark Submersible Arrays
Testing of Telemetry Equipment - Solar Powered Cord Arrays

Different testing of telemetry equipment to establish effectiveness for aquatic connectivity studies.

TRCA research scientists survey for Redside Dace in study pools within the Rouge River watershed.

3. Barrier Removal or Mitigation

TRCA restores aquatic ecosystems by removing or modifying instream barriers that disrupt natural water flow and fragment habitat.

These restoration projects reconnect upstream and downstream environments, supporting healthier, more resilient fish communities, enhancing biodiversity, and helping watersheds recover from historical impacts.

Each project is designed to restore natural channel function, improve hydrology, and create long‑term ecological benefits across the watershed.

Palgrave Dam
Palgrave Dam is located along a section of the Upper Humber River located in watercourses capable of supporting resident Brook and Brown Trout populations as well as a variety of other species. The Palgrave Mill Dam was built in 1850 to provide a local source of hydroelectric power and operated from 1850 to 1960. Although no longer in operation, the dam and the pond have remained in place to preserve this structure for its local historical and cultural heritage values. Given the decision to preserve and maintain the dam, a fishway was installed in 2001, to provide for increased aquatic connectivity, allowing fish to move past the Mill Dam in an effort to help support healthy aquatic ecosystems. At the request of the community, a public viewing window was installed at the midpoint of the fishway. The resulting fishway design is a series of stepped pools leading to the viewing window and ultimately to a box culvert leading into the head pond.

Engaging Partners in Our Work

  • Consultation with Municipal Partners and Private Sector: Collaborate to identify important barriers for removal, undertake studies to assess the level of impairment, or quantify the gains made from barrier removals or mitigation measures.
  • Engagement with Academic Researchers: Partner with researchers to study seasonal fish movement patterns, habitat use, and connectivity.
  • Support for Municipalities: Assist partner municipalities with the placement, design, and implementation of mitigation strategies to improve aquatic connectivity.

We are open to discussions with partners on any wildlife connectivity issues or opportunities for research and mitigation implementation in areas of concern across the jurisdiction.

Resources

Contact

TRCA Watershed Planning and Ecosystem Science: wpes@trca.ca